MAKE A MEME
View Large Image
| View Original: | Jahnoporus-Minimum Evolution-Tree-2.svg (215x103) | |||
| Download: | Original | Medium | Small | Thumb |
| Courtesy of: | commons.wikimedia.org | More Like This | ||
| Keywords: Jahnoporus-Minimum Evolution-Tree-2.svg Figure Evolutionary relationships of Jahnoporus <br/> The evolutionary history was inferred using the Minimum Evolution method using the 18S small subunit ribosomal RNA gene The optimal tree with the sum of branch length 0 11347278 is shown The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test 1000 replicates are shown next to the branches The tree is drawn to scale with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree The evolutionary distances were computed using the Maximum Composite Likelihood method and are in the units of the number of base substitutions per site The ME tree was searched using the Close-Neighbor-Interchange CNI algorithm at a search level of 2 The Neighbor-joining algorithm was used to generate the initial tree The analysis involved 15 nucleotide sequences All ambiguous positions were removed for each sequence pair There were a total of 1138 positions in the final dataset Phylogenetic and molecular evolutionary analyses were conducted using http //www megasoftware net MEGA version 5 Tamura Peterson Peterson Stecher Nei and Kumar 2011 All sequences were obtained from the Genbank and were aligned by the Muscle algorithm with standard settings ; List with GenBank Sequences http //www ncbi nlm nih gov/nuccore/AY336770 Diplomitoporus crustulinus GenBank AY336770 http //www ncbi nlm nih gov/nuccore/AY336768 Diplomitoporus lindbladii GenBank AY336768 http //www ncbi nlm nih gov/nuccore/AF026573 Polyporus squamosus GenBank AF026573 http //www ncbi nlm nih gov/nuccore/AF026573 Polyporus squamosus GenBank AY705963 http //www ncbi nlm nih gov/nuccore/AY336765 Fomitopsis pinicola GenBank AY336765 http //www ncbi nlm nih gov/nuccore/AY336764 Fomitopsis rosea GenBank AY336764 http //www ncbi nlm nih gov/nuccore/AF518570 Amylocystis lapponica GenBank AF518570 http //www ncbi nlm nih gov/nuccore/DQ911607 Jahnoporus hirtus GenBank DQ911607 http //www ncbi nlm nih gov/nuccore/AF334922 Oligoporus rennyi GenBank AF334922 http //www ncbi nlm nih gov/nuccore/AF518569 Albatrellus flettii GenBank AF518569 http //www ncbi nlm nih gov/nuccore/AF287829 Albatrellus skamanius GenBank AF287829 http //www ncbi nlm nih gov/nuccore/AF026582 Russula compacta GenBank AF026582 http //www ncbi nlm nih gov/nuccore/AY293156 Russula exalbicans GenBank AY293156 http //www ncbi nlm nih gov/nuccore/AY293136 Hydnum rufescens GenBank AY293136 http //www ncbi nlm nih gov/nuccore/AF026641 Hydnum repandum GenBank AF026641 own 2013-03-26 Thkgk Cc-zero Jahnoporus | ||||
