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| View Original: | Lentinellus Minimum Evolution Tree (28S rRNA-Gene).svg (250x133) | |||
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| Keywords: Lentinellus Minimum Evolution Tree (28S rRNA-Gene).svg Evolutionary relationships of Lentinellus<br/> The evolutionary history was inferred using the Minimum Evolution method on the 28S large subunit ribosomal RNA gene The optimal tree with the sum of branch length 0 20698165 is shown The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test 1000 replicates are shown next to the branches The tree is drawn to scale with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree The evolutionary distances were computed using the Maximum Composite Likelihood method and are in the units of the number of base substitutions per site The ME tree was searched using the Close-Neighbor-Interchange CNI algorithm at a search level of 1 The Neighbor-joining algorithm was used to generate the initial tree The analysis involved 20 nucleotide sequences All positions containing gaps and missing data were eliminated There were a total of 871 positions in the final dataset Evolutionary analyses were conducted in MEGA5 Gloeodontia discolor - AF506445 and Gloeodontia pyramidata - AF506446 were used as outgroup All sequences were obtained from the Genbank and were aligned by the Muscle algorithm with standard settings <br/> List of the GenBank Sequences http //www ncbi nlm nih gov/nuccore/GQ219736 Lentinellus castoreus subsp YL-2009 voucher HMJAU1495 - GQ219736 http //www ncbi nlm nih gov/nuccore/GQ219737 Lentinellus castoreus subsp YL-2009 voucher HMJAU7097 - GQ219737 http //www ncbi nlm nih gov/nuccore/GQ142028 Lentinellus ursinus voucher HMJAU6365 - GQ142028 http //www ncbi nlm nih gov/nuccore/GQ142030 Lentinellus ursinus voucher HMJAU6371 - GQ142030 http //www ncbi nlm nih gov/nuccore/GQ142032 Lentinellus flabelliformis voucher HKAS45505 - GQ142032 http //www ncbi nlm nih gov/nuccore/GQ142035 Lentinellus flabelliformis voucher HMJAU6384 - GQ142035 http //www ncbi nlm nih gov/nuccore/GQ142037 Lentinellus sinensis voucher HMJAU6370 - GQ142037 http //www ncbi nlm nih gov/nuccore/AF506415 Lentinellus auricula strain KGN280994 AF506415 http //www ncbi nlm nih gov/nuccore/GQ142031 Lentinellus brunnescens voucher HMJAU20186 - GQ142031 http //www ncbi nlm nih gov/nuccore/AF506417 Lentinellus cochleatus strain KGN960928 - AF506417 http //www ncbi nlm nih gov/nuccore/AY293172 Artomyces pyxidatus - AY293172 http //www ncbi nlm nih gov/nuccore/DQ389662 Artomyces pyxidatus voucher KGN941004 - DQ389662 http //www ncbi nlm nih gov/nuccore/AF506389 Dentipratulum bialoviesense - AF506389 http //www ncbi nlm nih gov/nuccore/AF506450 Gloiodon nigrescens - AF506450 http //www ncbi nlm nih gov/nuccore/AF506449 Gloiodon strigosus - AF506449 http //www ncbi nlm nih gov/nuccore/DQ911614 Auriscalpium vulgare isolate AFTOL-ID 1897 - DQ911614 http //www ncbi nlm nih gov/nuccore/AF261281 Auriscalpium vulgare strain F799 - AF261281 http //www ncbi nlm nih gov/nuccore/AF261281 Auriscalpium vulgare strain F799 - AF261281 http //www ncbi nlm nih gov/nuccore/AF506445 Gloeodontia discolor - AF506445 http //www ncbi nlm nih gov/nuccore/AF506446 Gloeodontia pyramidata - AF506446 own 2014-06-13 User Thkgk Cc-zero Lentinellus | ||||
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